J3_7RYG_035

3D structure

PDB id

7RYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

7RYG|1|a|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RYG_035 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1797

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

7RYG|1|a|C|987
7RYG|1|a|U|988
7RYG|1|a|U|989
7RYG|1|a|G|990
7RYG|1|a|A|991
7RYG|1|a|C|992
7RYG|1|a|A|993
7RYG|1|a|U|994
*
7RYG|1|a|A|1041
7RYG|1|a|C|1042
7RYG|1|a|A|1043
7RYG|1|a|G|1044
*
7RYG|1|a|C|1207
7RYG|1|a|U|1208
7RYG|1|a|U|1209
7RYG|1|a|A|1210
7RYG|1|a|C|1211
7RYG|1|a|G|1212

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S14