J3_7RYG_038

3D structure

PDB id

7RYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

AGGACG*CC*GAAAAGU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RYG_038 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.1149

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7RYG|1|A|A|1419
7RYG|1|A|G|1420
7RYG|1|A|G|1421
7RYG|1|A|A|1422
7RYG|1|A|C|1423
7RYG|1|A|G|1424
*
7RYG|1|A|C|1562
7RYG|1|A|C|1563
*
7RYG|1|A|G|1566
7RYG|1|A|A|1567
7RYG|1|A|A|1568
7RYG|1|A|A|1569
7RYG|1|A|A|1570
7RYG|1|A|G|1571
7RYG|1|A|U|1572

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2