J3_7S0S_009

3D structure

PDB id

7S0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UCGGGAC*GACAA*UA

Length

14 nucleotides

Bulged bases

7S0S|1|C|A|1499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7S0S_009 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.1337

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

7S0S|1|C|U|1459
7S0S|1|C|C|1460
7S0S|1|C|G|1461
7S0S|1|C|G|1462
7S0S|1|C|G|1463
7S0S|1|C|A|1464
7S0S|1|C|C|1465
*
7S0S|1|C|G|1496
7S0S|1|C|A|1497
7S0S|1|C|C|1498
7S0S|1|C|A|1499
7S0S|1|C|A|1500
*
7S0S|1|C|U|1517
7S0S|1|C|A|1518

Current chains

Chain C

23S rRNA

Nearby chains

Chain V

50S ribosomal protein L23