J3_7S0S_014

3D structure

PDB id

7S0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

7S0S|1|C|A|2742, 7S0S|1|C|U|2743

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7S0S_014 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.0809

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

7S0S|1|C|C|2741
7S0S|1|C|A|2742
7S0S|1|C|U|2743
7S0S|1|C|C|2744
*
7S0S|1|C|G|2769
7S0S|1|C|U|2770
7S0S|1|C|U|2771
*
7S0S|1|C|A|2785
7S0S|1|C|U|2786
7S0S|1|C|U|2787
7S0S|1|C|A|2788
7S0S|1|C|A|2789
7S0S|1|C|A|2790
7S0S|1|C|G|2791

Current chains

Chain C

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L3

Chain M

50S ribosomal protein L14