J3_7S0S_017

3D structure

PDB id

7S0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GC*GUGAAAAGUAC*GAGUGAAAGAGUACC

Length

28 nucleotides

Bulged bases

7S0S|1|C|G|591, 7S0S|1|C|A|595

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7S0S_017 not in the Motif Atlas

Homologous match to J3_5J7L_066

Geometric discrepancy: 0.163

The information below is about J3_5J7L_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7S0S|1|C|G|27
7S0S|1|C|C|28
*
7S0S|1|C|G|562
7S0S|1|C|U|563
7S0S|1|C|G|564
7S0S|1|C|A|565
7S0S|1|C|A|566
7S0S|1|C|A|567
7S0S|1|C|A|568
7S0S|1|C|G|569
7S0S|1|C|U|570
7S0S|1|C|A|571
7S0S|1|C|C|572
*
7S0S|1|C|G|583
7S0S|1|C|A|584
7S0S|1|C|G|585
7S0S|1|C|U|586
7S0S|1|C|G|587
7S0S|1|C|A|588
7S0S|1|C|A|589
7S0S|1|C|A|590
7S0S|1|C|G|591
7S0S|1|C|A|592
7S0S|1|C|G|593
7S0S|1|C|U|594
7S0S|1|C|A|595
7S0S|1|C|C|596
7S0S|1|C|C|597

Current chains

Chain C

23S rRNA

Nearby chains

Chain S

50S ribosomal protein L20

Chain U

50S ribosomal protein L22

Chain W

50S ribosomal protein L24