J3_7S0S_018
3D structure
- PDB id
- 7S0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- CUUG*CGAUAGCGGAUUAGUAC*GGAAUG
- Length
- 27 nucleotides
- Bulged bases
- 7S0S|1|C|U|31, 7S0S|1|C|U|536, 7S0S|1|C|U|544
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7S0S_018 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.2574
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
7S0S|1|C|C|29
7S0S|1|C|U|30
7S0S|1|C|U|31
7S0S|1|C|G|32
*
7S0S|1|C|C|533
7S0S|1|C|G|534
7S0S|1|C|A|535
7S0S|1|C|U|536
7S0S|1|C|A|537
7S0S|1|C|G|538
7S0S|1|C|C|539
7S0S|1|C|G|540
7S0S|1|C|G|541
7S0S|1|C|A|542
7S0S|1|C|U|543
7S0S|1|C|U|544
7S0S|1|C|A|545
7S0S|1|C|G|546
7S0S|1|C|U|547
7S0S|1|C|A|548
7S0S|1|C|C|549
*
7S0S|1|C|G|556
7S0S|1|C|G|557
7S0S|1|C|A|558
7S0S|1|C|A|559
7S0S|1|C|U|560
7S0S|1|C|G|561
Current chains
- Chain C
- 23S rRNA
Nearby chains
- Chain F
- 50S ribosomal protein L4
- Chain S
- 50S ribosomal protein L20
- Chain V
- 50S ribosomal protein L23
- Chain e
- 50S ribosomal protein L34
Coloring options: