J3_7S1I_020

3D structure

PDB id

7S1I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli stalled ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

7S1I|1|I|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7S1I_020 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1078

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

7S1I|1|I|C|1306
7S1I|1|I|A|1307
7S1I|1|I|A|1308
7S1I|1|I|G|1309
*
7S1I|1|I|C|1605
7S1I|1|I|C|1606
7S1I|1|I|C|1607
7S1I|1|I|A|1608
7S1I|1|I|A|1609
7S1I|1|I|A|1610
7S1I|1|I|C|1611
*
7S1I|1|I|G|1620
7S1I|1|I|U|1621
7S1I|1|I|G|1622

Current chains

Chain I

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L34