J3_7S1I_029

3D structure

PDB id

7S1I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli stalled ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

7S1I|1|C|C|48, 7S1I|1|C|A|50, 7S1I|1|C|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7S1I_029 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.0735

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7S1I|1|C|G|46
7S1I|1|C|C|47
7S1I|1|C|C|48
7S1I|1|C|U|49
7S1I|1|C|A|50
7S1I|1|C|A|51
7S1I|1|C|C|52
*
7S1I|1|C|G|359
7S1I|1|C|G|360
7S1I|1|C|G|361
7S1I|1|C|G|362
7S1I|1|C|A|363
7S1I|1|C|A|364
7S1I|1|C|U|365
7S1I|1|C|A|366
7S1I|1|C|U|367
*
7S1I|1|C|A|393
7S1I|1|C|G|394
7S1I|1|C|C|395

Current chains

Chain C

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S12

Chain x

30S ribosomal protein S16