J3_7S1I_037

3D structure

PDB id

7S1I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli stalled ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7S1I_037 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0646

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7S1I|1|I|G|1424
7S1I|1|I|G|1425
7S1I|1|I|G|1426
7S1I|1|I|A|1427
7S1I|1|I|C|1428
7S1I|1|I|G|1429
*
7S1I|1|I|C|1564
7S1I|1|I|C|1565
*
7S1I|1|I|G|1568
7S1I|1|I|A|1569
7S1I|1|I|A|1570
7S1I|1|I|A|1571
7S1I|1|I|A|1572
7S1I|1|I|G|1573
7S1I|1|I|C|1574

Current chains

Chain I

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L2