J3_7S1J_004

3D structure

PDB id

7S1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

7S1J|1|C|U|871, 7S1J|1|C|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7S1J_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0633

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

7S1J|1|C|C|826
7S1J|1|C|U|827
7S1J|1|C|U|828
7S1J|1|C|G|829
*
7S1J|1|C|C|857
7S1J|1|C|G|858
7S1J|1|C|G|859
7S1J|1|C|A|860
7S1J|1|C|G|861
*
7S1J|1|C|C|868
7S1J|1|C|G|869
7S1J|1|C|U|870
7S1J|1|C|U|871
7S1J|1|C|A|872
7S1J|1|C|A|873
7S1J|1|C|G|874

Current chains

Chain C

16S rRNA

Nearby chains

Chain 3

30S ribosomal protein S21

Chain D

30S ribosomal protein S2

Chain o

30S ribosomal protein S8