J3_7S1J_034

3D structure

PDB id

7S1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7S1J_034 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0674

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7S1J|1|I|G|1424
7S1J|1|I|G|1425
7S1J|1|I|G|1426
7S1J|1|I|A|1427
7S1J|1|I|C|1428
7S1J|1|I|G|1429
*
7S1J|1|I|C|1564
7S1J|1|I|C|1565
*
7S1J|1|I|G|1568
7S1J|1|I|A|1569
7S1J|1|I|A|1570
7S1J|1|I|A|1571
7S1J|1|I|A|1572
7S1J|1|I|G|1573
7S1J|1|I|C|1574

Current chains

Chain I

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L2