J3_7S1K_004

3D structure

PDB id

7S1K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

7S1K|1|C|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7S1K_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0632

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

7S1K|1|C|C|826
7S1K|1|C|U|827
7S1K|1|C|U|828
7S1K|1|C|G|829
*
7S1K|1|C|C|857
7S1K|1|C|G|858
7S1K|1|C|G|859
7S1K|1|C|A|860
7S1K|1|C|G|861
*
7S1K|1|C|C|868
7S1K|1|C|G|869
7S1K|1|C|U|870
7S1K|1|C|U|871
7S1K|1|C|A|872
7S1K|1|C|A|873
7S1K|1|C|G|874

Current chains

Chain C

16S rRNA

Nearby chains

Chain 3

30S ribosomal protein S21

Chain D

30S ribosomal protein S2

Chain o

30S ribosomal protein S8