J3_7S9U_010

3D structure

PDB id

7S9U (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR3C ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GUUGAU*AAUCG

Length

13 nucleotides

Bulged bases

7S9U|1|A|U|2858, 7S9U|1|A|A|2860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7S9U_010 not in the Motif Atlas

Homologous match to J3_7A0S_013

Geometric discrepancy: 0.2001

The information below is about J3_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

7S9U|1|A|C|2839
7S9U|1|A|C|2840
*
7S9U|1|A|G|2856
7S9U|1|A|U|2857
7S9U|1|A|U|2858
7S9U|1|A|G|2859
7S9U|1|A|A|2860
7S9U|1|A|U|2861
*
7S9U|1|A|A|2907
7S9U|1|A|A|2908
7S9U|1|A|U|2909
7S9U|1|A|C|2910
7S9U|1|A|G|2911

Current chains

Chain A

RNA (2436-MER)

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17

Chain b

50S ribosomal protein L32