J3_7S9U_015

3D structure

PDB id

7S9U (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR3C ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCGGGAC*GACAA*UA

Length

14 nucleotides

Bulged bases

7S9U|1|A|C|1384, 7S9U|1|A|A|1423

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7S9U_015 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.1927

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

10

Unit IDs

7S9U|1|A|U|1383
7S9U|1|A|C|1384
7S9U|1|A|G|1385
7S9U|1|A|G|1386
7S9U|1|A|G|1387
7S9U|1|A|A|1388
7S9U|1|A|C|1389
*
7S9U|1|A|G|1420
7S9U|1|A|A|1421
7S9U|1|A|C|1422
7S9U|1|A|A|1423
7S9U|1|A|A|1424
*
7S9U|1|A|U|1441
7S9U|1|A|A|1442

Current chains

Chain A

RNA (2436-MER)

Nearby chains

Chain T

50S ribosomal protein L23