J3_7SA4_017

3D structure

PDB id

7SA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

7SA4|1|2|U|871, 7SA4|1|2|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SA4_017 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0605

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

7SA4|1|2|C|826
7SA4|1|2|U|827
7SA4|1|2|U|828
7SA4|1|2|G|829
*
7SA4|1|2|C|857
7SA4|1|2|G|858
7SA4|1|2|G|859
7SA4|1|2|A|860
7SA4|1|2|G|861
*
7SA4|1|2|C|868
7SA4|1|2|G|869
7SA4|1|2|U|870
7SA4|1|2|U|871
7SA4|1|2|A|872
7SA4|1|2|A|873
7SA4|1|2|G|874

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S2

Chain m

30S ribosomal protein S8

Chain z

30S ribosomal protein S21