J3_7SA4_032

3D structure

PDB id

7SA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

7SA4|1|2|C|48, 7SA4|1|2|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SA4_032 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.0706

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7SA4|1|2|G|46
7SA4|1|2|C|47
7SA4|1|2|C|48
7SA4|1|2|U|49
7SA4|1|2|A|50
7SA4|1|2|A|51
7SA4|1|2|C|52
*
7SA4|1|2|G|359
7SA4|1|2|G|360
7SA4|1|2|G|361
7SA4|1|2|G|362
7SA4|1|2|A|363
7SA4|1|2|A|364
7SA4|1|2|U|365
7SA4|1|2|A|366
7SA4|1|2|U|367
*
7SA4|1|2|A|393
7SA4|1|2|G|394
7SA4|1|2|C|395

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S12

Chain u

30S ribosomal protein S16