J3_7SAE_012

3D structure

PDB id

7SAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR70P Class1 ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

7SAE|1|A|U|34, 7SAE|1|A|U|495, 7SAE|1|A|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SAE_012 not in the Motif Atlas

Homologous match to J3_9DFE_003

Geometric discrepancy: 0.1258

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

7SAE|1|A|C|32
7SAE|1|A|U|33
7SAE|1|A|U|34
7SAE|1|A|G|35
*
7SAE|1|A|C|492
7SAE|1|A|G|493
7SAE|1|A|A|494
7SAE|1|A|U|495
7SAE|1|A|A|496
7SAE|1|A|G|497
7SAE|1|A|U|498
7SAE|1|A|G|499
7SAE|1|A|A|500
7SAE|1|A|A|501
7SAE|1|A|C|502
7SAE|1|A|C|503
7SAE|1|A|A|504
7SAE|1|A|G|505
7SAE|1|A|U|506
7SAE|1|A|A|507
7SAE|1|A|C|508
*
7SAE|1|A|G|515
7SAE|1|A|G|516
7SAE|1|A|A|517
7SAE|1|A|A|518
7SAE|1|A|A|519
7SAE|1|A|G|520

Current chains

Chain A

RNA (2434-MER)

Nearby chains

Chain E

50S ribosomal protein L4

Chain Q

50S ribosomal protein L20

Chain T

50S ribosomal protein L23

Chain d

50S ribosomal protein L34