J3_7SS9_030

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SS9_030 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.1312

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7SS9|1|1|G|1424
7SS9|1|1|G|1425
7SS9|1|1|G|1426
7SS9|1|1|A|1427
7SS9|1|1|C|1428
7SS9|1|1|G|1429
*
7SS9|1|1|C|1564
7SS9|1|1|C|1565
*
7SS9|1|1|G|1568
7SS9|1|1|A|1569
7SS9|1|1|A|1570
7SS9|1|1|A|1571
7SS9|1|1|A|1572
7SS9|1|1|G|1573
7SS9|1|1|C|1574

Current chains

Chain 1

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L2