J3_7SSD_006

3D structure

PDB id

7SSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid translocation intermediate with EF-G bound with GDP (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SSD_006 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.1003

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7SSD|1|1|C|1298
7SSD|1|1|G|1299
7SSD|1|1|G|1300
7SSD|1|1|A|1301
7SSD|1|1|A|1302
7SSD|1|1|G|1303
*
7SSD|1|1|C|1625
7SSD|1|1|A|1626
7SSD|1|1|G|1627
*
7SSD|1|1|C|1639
7SSD|1|1|A|1640
7SSD|1|1|A|1641
7SSD|1|1|G|1642

Current chains

Chain 1

23S rRNA

Nearby chains