J3_7SSD_007

3D structure

PDB id

7SSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid translocation intermediate with EF-G bound with GDP (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

7SSD|1|1|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SSD_007 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1304

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

7SSD|1|1|C|1306
7SSD|1|1|A|1307
7SSD|1|1|A|1308
7SSD|1|1|G|1309
*
7SSD|1|1|C|1605
7SSD|1|1|C|1606
7SSD|1|1|C|1607
7SSD|1|1|A|1608
7SSD|1|1|A|1609
7SSD|1|1|A|1610
7SSD|1|1|C|1611
*
7SSD|1|1|G|1620
7SSD|1|1|U|1621
7SSD|1|1|G|1622

Current chains

Chain 1

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L34