J3_7SSL_006

3D structure

PDB id

7SSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

7SSL|1|1|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SSL_006 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.2075

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7SSL|1|1|C|1298
7SSL|1|1|G|1299
7SSL|1|1|G|1300
7SSL|1|1|A|1301
7SSL|1|1|A|1302
7SSL|1|1|G|1303
*
7SSL|1|1|C|1625
7SSL|1|1|A|1626
7SSL|1|1|G|1627
*
7SSL|1|1|C|1639
7SSL|1|1|A|1640
7SSL|1|1|A|1641
7SSL|1|1|G|1642

Current chains

Chain 1

23S rRNA

Nearby chains