3D structure

PDB id
7SSL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CAAG*CCCAAAC*GUG
Length
14 nucleotides
Bulged bases
7SSL|1|1|A|1609
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7SSL_007 not in the Motif Atlas
Homologous match to J3_7A0S_007
Geometric discrepancy: 0.1509
The information below is about J3_7A0S_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_71677.1
Basepair signature
cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW
Number of instances in this motif group
2

Unit IDs

7SSL|1|1|C|1306
7SSL|1|1|A|1307
7SSL|1|1|A|1308
7SSL|1|1|G|1309
*
7SSL|1|1|C|1605
7SSL|1|1|C|1606
7SSL|1|1|C|1607
7SSL|1|1|A|1608
7SSL|1|1|A|1609
7SSL|1|1|A|1610
7SSL|1|1|C|1611
*
7SSL|1|1|G|1620
7SSL|1|1|U|1621
7SSL|1|1|G|1622

Current chains

Chain 1
23S rRNA

Nearby chains

Chain D
50S ribosomal protein L34

Coloring options:


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