J3_7SSL_025
3D structure
- PDB id
- 7SSL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAAUG*CGUAGUCC*GUCG
- Length
- 17 nucleotides
- Bulged bases
- 7SSL|1|3|U|1240, 7SSL|1|3|C|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7SSL_025 not in the Motif Atlas
- Homologous match to J3_5J7L_011
- Geometric discrepancy: 0.2736
- The information below is about J3_5J7L_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.6
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
7SSL|1|3|C|1237
7SSL|1|3|A|1238
7SSL|1|3|A|1239
7SSL|1|3|U|1240
7SSL|1|3|G|1241
*
7SSL|1|3|C|1296
7SSL|1|3|G|1297
7SSL|1|3|U|1298
7SSL|1|3|A|1299
7SSL|1|3|G|1300
7SSL|1|3|U|1301
7SSL|1|3|C|1302
7SSL|1|3|C|1303
*
7SSL|1|3|G|1334
7SSL|1|3|U|1335
7SSL|1|3|C|1336
7SSL|1|3|G|1337
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain L
- 30S ribosomal protein S7
- Chain R
- 30S ribosomal protein S13
Coloring options: