3D structure

PDB id
7SSN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pre translocation 70S ribosome with A/P* and P/E tRNA (Structure II-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GCCUAAC*GGGGAAUAU*AGC
Length
19 nucleotides
Bulged bases
7SSN|1|3|C|48, 7SSN|1|3|A|50, 7SSN|1|3|A|51
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7SSN_034 not in the Motif Atlas
Homologous match to J3_5J7L_050
Geometric discrepancy: 0.1135
The information below is about J3_5J7L_050
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_46317.4
Basepair signature
cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

7SSN|1|3|G|46
7SSN|1|3|C|47
7SSN|1|3|C|48
7SSN|1|3|U|49
7SSN|1|3|A|50
7SSN|1|3|A|51
7SSN|1|3|C|52
*
7SSN|1|3|G|359
7SSN|1|3|G|360
7SSN|1|3|G|361
7SSN|1|3|G|362
7SSN|1|3|A|363
7SSN|1|3|A|364
7SSN|1|3|U|365
7SSN|1|3|A|366
7SSN|1|3|U|367
*
7SSN|1|3|A|393
7SSN|1|3|G|394
7SSN|1|3|C|395

Current chains

Chain 3
16S rRNA

Nearby chains

Chain Q
30S ribosomal protein S12
Chain U
30S ribosomal protein S16

Coloring options:


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