J3_7SSO_006

3D structure

PDB id

7SSO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation 70S ribosome with A/A and P/E tRNA (Structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

7SSO|1|1|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SSO_006 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.131

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7SSO|1|1|C|1298
7SSO|1|1|G|1299
7SSO|1|1|G|1300
7SSO|1|1|A|1301
7SSO|1|1|A|1302
7SSO|1|1|G|1303
*
7SSO|1|1|C|1625
7SSO|1|1|A|1626
7SSO|1|1|G|1627
*
7SSO|1|1|C|1639
7SSO|1|1|A|1640
7SSO|1|1|A|1641
7SSO|1|1|G|1642

Current chains

Chain 1

23S rRNA

Nearby chains