J3_7SSW_011
3D structure
- PDB id
- 7SSW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Late translocation intermediate with EF-G dissociated (Structure VI)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAUC*GUAU*AUUUAAAG
- Length
- 16 nucleotides
- Bulged bases
- 7SSW|1|1|A|2518, 7SSW|1|1|U|2519
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7SSW_011 not in the Motif Atlas
- Geometric match to J3_4V9F_009
- Geometric discrepancy: 0.2512
- The information below is about J3_4V9F_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_68010.1
- Basepair signature
- cWW-cWH-cWW-cSS-tWH-tSS-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
7SSW|1|1|C|2517
7SSW|1|1|A|2518
7SSW|1|1|U|2519
7SSW|1|1|C|2520
*
7SSW|1|1|G|2545
7SSW|1|1|U|2546
7SSW|1|1|A|2547
7SSW|1|1|U|2548
*
7SSW|1|1|A|2560
7SSW|1|1|U|2561
7SSW|1|1|U|2562
7SSW|1|1|U|2563
7SSW|1|1|A|2564
7SSW|1|1|A|2565
7SSW|1|1|A|2566
7SSW|1|1|G|2567
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain c
- 50S ribosomal protein L3
- Chain k
- 50S ribosomal protein L14
Coloring options: