J3_7ST7_006

3D structure

PDB id

7ST7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ST7_006 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.1332

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7ST7|1|1|C|1298
7ST7|1|1|G|1299
7ST7|1|1|G|1300
7ST7|1|1|A|1301
7ST7|1|1|A|1302
7ST7|1|1|G|1303
*
7ST7|1|1|C|1625
7ST7|1|1|A|1626
7ST7|1|1|G|1627
*
7ST7|1|1|C|1639
7ST7|1|1|A|1640
7ST7|1|1|A|1641
7ST7|1|1|G|1642

Current chains

Chain 1

23S rRNA

Nearby chains