J3_7ST7_017
3D structure
- PDB id
- 7ST7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUUG*CGGAG*CGUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 7ST7|1|3|U|871
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ST7_017 not in the Motif Atlas
- Homologous match to J3_5J7L_004
- Geometric discrepancy: 0.1142
- The information below is about J3_5J7L_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85054.4
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
7ST7|1|3|C|826
7ST7|1|3|U|827
7ST7|1|3|U|828
7ST7|1|3|G|829
*
7ST7|1|3|C|857
7ST7|1|3|G|858
7ST7|1|3|G|859
7ST7|1|3|A|860
7ST7|1|3|G|861
*
7ST7|1|3|C|868
7ST7|1|3|G|869
7ST7|1|3|U|870
7ST7|1|3|U|871
7ST7|1|3|A|872
7ST7|1|3|A|873
7ST7|1|3|G|874
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain G
- 30S ribosomal protein S2
- Chain M
- 30S ribosomal protein S8
- Chain Z
- 30S ribosomal protein S21
Coloring options: