J3_7ST7_032
3D structure
- PDB id
- 7ST7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCCUAAC*GGGGAAUAU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 7ST7|1|3|A|50, 7ST7|1|3|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ST7_032 not in the Motif Atlas
- Homologous match to J3_5J7L_050
- Geometric discrepancy: 0.1225
- The information below is about J3_5J7L_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7ST7|1|3|G|46
7ST7|1|3|C|47
7ST7|1|3|C|48
7ST7|1|3|U|49
7ST7|1|3|A|50
7ST7|1|3|A|51
7ST7|1|3|C|52
*
7ST7|1|3|G|359
7ST7|1|3|G|360
7ST7|1|3|G|361
7ST7|1|3|G|362
7ST7|1|3|A|363
7ST7|1|3|A|364
7ST7|1|3|U|365
7ST7|1|3|A|366
7ST7|1|3|U|367
*
7ST7|1|3|A|393
7ST7|1|3|G|394
7ST7|1|3|C|395
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain 8
- Elongation factor G
- Chain Q
- 30S ribosomal protein S12
- Chain U
- 30S ribosomal protein S16
Coloring options: