J3_7SYG_004

3D structure

PDB id

7SYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

AUUC*GGACCAGAG*CAUUU

Length

18 nucleotides

Bulged bases

7SYG|1|2|G|991

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SYG_004 not in the Motif Atlas

Homologous match to J3_8P9A_074

Geometric discrepancy: 0.1521

The information below is about J3_8P9A_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23895.1

Basepair signature

cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7SYG|1|2|A|938
7SYG|1|2|U|939
7SYG|1|2|U|940
7SYG|1|2|C|941
*
7SYG|1|2|G|985
7SYG|1|2|G|986
7SYG|1|2|A|987
7SYG|1|2|C|988
7SYG|1|2|C|989
7SYG|1|2|A|990
7SYG|1|2|G|991
7SYG|1|2|A|992
7SYG|1|2|G|993
*
7SYG|1|2|C|1000
7SYG|1|2|A|1001
7SYG|1|2|U|1002
7SYG|1|2|U|1003
7SYG|1|2|U|1004

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

40S ribosomal protein S3a

Chain O

uS15

Chain P

uS11

Chain b

eS26