J3_7SYI_002
3D structure
- PDB id
- 7SYI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- UGG*UAAGA*UA
- Length
- 10 nucleotides
- Bulged bases
- 7SYI|1|2|G|921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7SYI_002 not in the Motif Atlas
- Geometric match to J3_4V88_080
- Geometric discrepancy: 0.2807
- The information below is about J3_4V88_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_56052.3
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
7SYI|1|2|U|682
7SYI|1|2|G|683
7SYI|1|2|G|684
*
7SYI|1|2|U|918
7SYI|1|2|A|919
7SYI|1|2|A|920
7SYI|1|2|G|921
7SYI|1|2|A|922
*
7SYI|1|2|U|1022
7SYI|1|2|A|1023
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain I
- 40S ribosomal protein S7
- Chain M
- uS17
- Chain O
- uS15
- Chain X
- uS8
- Chain Y
- uS12
- Chain c
- eS27
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