J3_7SYK_003

3D structure

PDB id

7SYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AUUC*GGACCAGAG*CAUUU

Length

18 nucleotides

Bulged bases

7SYK|1|2|G|991

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SYK_003 not in the Motif Atlas

Homologous match to J3_8P9A_074

Geometric discrepancy: 0.1421

The information below is about J3_8P9A_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76375.1

Basepair signature

cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW

Number of instances in this motif group

1

Unit IDs

7SYK|1|2|A|938
7SYK|1|2|U|939
7SYK|1|2|U|940
7SYK|1|2|C|941
*
7SYK|1|2|G|985
7SYK|1|2|G|986
7SYK|1|2|A|987
7SYK|1|2|C|988
7SYK|1|2|C|989
7SYK|1|2|A|990
7SYK|1|2|G|991
7SYK|1|2|A|992
7SYK|1|2|G|993
*
7SYK|1|2|C|1000
7SYK|1|2|A|1001
7SYK|1|2|U|1002
7SYK|1|2|U|1003
7SYK|1|2|U|1004

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

eS1

Chain O

uS15

Chain P

uS11

Chain b

eS26 (S26)