J3_7SYM_004

3D structure

PDB id

7SYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

AUUC*GGACCAGAG*CAUUU

Length

18 nucleotides

Bulged bases

7SYM|1|2|G|991

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SYM_004 not in the Motif Atlas

Homologous match to J3_8P9A_074

Geometric discrepancy: 0.132

The information below is about J3_8P9A_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76375.1

Basepair signature

cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW

Number of instances in this motif group

1

Unit IDs

7SYM|1|2|A|938
7SYM|1|2|U|939
7SYM|1|2|U|940
7SYM|1|2|C|941
*
7SYM|1|2|G|985
7SYM|1|2|G|986
7SYM|1|2|A|987
7SYM|1|2|C|988
7SYM|1|2|C|989
7SYM|1|2|A|990
7SYM|1|2|G|991
7SYM|1|2|A|992
7SYM|1|2|G|993
*
7SYM|1|2|C|1000
7SYM|1|2|A|1001
7SYM|1|2|U|1002
7SYM|1|2|U|1003
7SYM|1|2|U|1004

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

40S ribosomal protein S3a

Chain O

uS15

Chain P

uS11

Chain b

eS26 (S26)