J3_7SYM_012
3D structure
- PDB id
- 7SYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.8 Å
Loop
- Sequence
- CACUG*CGUGAUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 7SYM|1|2|U|1535, 7SYM|1|2|G|1603
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7SYM_012 not in the Motif Atlas
- Homologous match to J3_8C3A_044
- Geometric discrepancy: 0.2611
- The information below is about J3_8C3A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.4
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
7SYM|1|2|C|1532
7SYM|1|2|A|1533
7SYM|1|2|C|1534
7SYM|1|2|U|1535
7SYM|1|2|G|1536
*
7SYM|1|2|C|1597
7SYM|1|2|G|1598
7SYM|1|2|U|1599
7SYM|1|2|G|1600
7SYM|1|2|A|1601
7SYM|1|2|U|1602
7SYM|1|2|G|1603
7SYM|1|2|G|1604
*
7SYM|1|2|C|1635
7SYM|1|2|G|1636
7SYM|1|2|A|1637
7SYM|1|2|G|1638
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain G
- uS7
- Chain T
- uS13
- Chain U
- eS19
- Chain a
- 40S ribosomal protein S25
Coloring options: