J3_7SYO_003

3D structure

PDB id

7SYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

AUUC*GGACCAGAG*CAUUU

Length

18 nucleotides

Bulged bases

7SYO|1|2|G|991

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SYO_003 not in the Motif Atlas

Homologous match to J3_8P9A_074

Geometric discrepancy: 0.1985

The information below is about J3_8P9A_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76375.1

Basepair signature

cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW

Number of instances in this motif group

1

Unit IDs

7SYO|1|2|A|938
7SYO|1|2|U|939
7SYO|1|2|U|940
7SYO|1|2|C|941
*
7SYO|1|2|G|985
7SYO|1|2|G|986
7SYO|1|2|A|987
7SYO|1|2|C|988
7SYO|1|2|C|989
7SYO|1|2|A|990
7SYO|1|2|G|991
7SYO|1|2|A|992
7SYO|1|2|G|993
*
7SYO|1|2|C|1000
7SYO|1|2|A|1001
7SYO|1|2|U|1002
7SYO|1|2|U|1003
7SYO|1|2|U|1004

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

eS1

Chain O

uS15

Chain P

uS11

Chain b

eS26