J3_7SYP_003

3D structure

PDB id

7SYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AUUC*GGACCAGAG*CAUUU

Length

18 nucleotides

Bulged bases

7SYP|1|2|G|991

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SYP_003 not in the Motif Atlas

Homologous match to J3_8P9A_074

Geometric discrepancy: 0.1281

The information below is about J3_8P9A_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76375.1

Basepair signature

cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW

Number of instances in this motif group

1

Unit IDs

7SYP|1|2|A|938
7SYP|1|2|U|939
7SYP|1|2|U|940
7SYP|1|2|C|941
*
7SYP|1|2|G|985
7SYP|1|2|G|986
7SYP|1|2|A|987
7SYP|1|2|C|988
7SYP|1|2|C|989
7SYP|1|2|A|990
7SYP|1|2|G|991
7SYP|1|2|A|992
7SYP|1|2|G|993
*
7SYP|1|2|C|1000
7SYP|1|2|A|1001
7SYP|1|2|U|1002
7SYP|1|2|U|1003
7SYP|1|2|U|1004

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

eS1

Chain O

uS15

Chain P

uS11

Chain b

eS26