J3_7SYP_010

3D structure

PDB id

7SYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SYP_010 not in the Motif Atlas

Geometric match to J3_4V88_082

Geometric discrepancy: 0.2386

The information below is about J3_4V88_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.1

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7SYP|1|2|U|1350
7SYP|1|2|G|1351
*
7SYP|1|2|U|1360
7SYP|1|2|G|1361
7SYP|1|2|U|1362
7SYP|1|2|C|1363
*
7SYP|1|2|G|1375
7SYP|1|2|A|1376
7SYP|1|2|U|1377
7SYP|1|2|A|1378
7SYP|1|2|A|1379

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

uS2 (SA)

Chain D

uS5

Chain S

eS17