J3_7SYQ_004

3D structure

PDB id

7SYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUUC*GGACCAGAG*CAUUU

Length

18 nucleotides

Bulged bases

7SYQ|1|2|G|991

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SYQ_004 not in the Motif Atlas

Homologous match to J3_8P9A_074

Geometric discrepancy: 0.1263

The information below is about J3_8P9A_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76375.1

Basepair signature

cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW

Number of instances in this motif group

1

Unit IDs

7SYQ|1|2|A|938
7SYQ|1|2|U|939
7SYQ|1|2|U|940
7SYQ|1|2|C|941
*
7SYQ|1|2|G|985
7SYQ|1|2|G|986
7SYQ|1|2|A|987
7SYQ|1|2|C|988
7SYQ|1|2|C|989
7SYQ|1|2|A|990
7SYQ|1|2|G|991
7SYQ|1|2|A|992
7SYQ|1|2|G|993
*
7SYQ|1|2|C|1000
7SYQ|1|2|A|1001
7SYQ|1|2|U|1002
7SYQ|1|2|U|1003
7SYQ|1|2|U|1004

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

eS1

Chain O

uS15

Chain P

uS11

Chain b

eS26