J3_7SYR_004

3D structure

PDB id

7SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AUUC*GGACCAGAG*CAUUU

Length

18 nucleotides

Bulged bases

7SYR|1|2|G|991

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SYR_004 not in the Motif Atlas

Homologous match to J3_8P9A_074

Geometric discrepancy: 0.1134

The information below is about J3_8P9A_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23895.1

Basepair signature

cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7SYR|1|2|A|938
7SYR|1|2|U|939
7SYR|1|2|U|940
7SYR|1|2|C|941
*
7SYR|1|2|G|985
7SYR|1|2|G|986
7SYR|1|2|A|987
7SYR|1|2|C|988
7SYR|1|2|C|989
7SYR|1|2|A|990
7SYR|1|2|G|991
7SYR|1|2|A|992
7SYR|1|2|G|993
*
7SYR|1|2|C|1000
7SYR|1|2|A|1001
7SYR|1|2|U|1002
7SYR|1|2|U|1003
7SYR|1|2|U|1004

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

eS1

Chain P

uS11

Chain b

eS26