J3_7SYT_004

3D structure

PDB id

7SYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

AUUC*GGACCAGAG*CAUUU

Length

18 nucleotides

Bulged bases

7SYT|1|2|G|991

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SYT_004 not in the Motif Atlas

Homologous match to J3_8P9A_074

Geometric discrepancy: 0.1511

The information below is about J3_8P9A_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23895.1

Basepair signature

cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7SYT|1|2|A|938
7SYT|1|2|U|939
7SYT|1|2|U|940
7SYT|1|2|C|941
*
7SYT|1|2|G|985
7SYT|1|2|G|986
7SYT|1|2|A|987
7SYT|1|2|C|988
7SYT|1|2|C|989
7SYT|1|2|A|990
7SYT|1|2|G|991
7SYT|1|2|A|992
7SYT|1|2|G|993
*
7SYT|1|2|C|1000
7SYT|1|2|A|1001
7SYT|1|2|U|1002
7SYT|1|2|U|1003
7SYT|1|2|U|1004

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

eS1

Chain O

uS15

Chain P

uS11

Chain b

eS26 (S26)