J3_7SYT_009

3D structure

PDB id

7SYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

CGGAC*GGGUG*UUAGAUG

Length

17 nucleotides

Bulged bases

7SYT|1|2|G|1274, 7SYT|1|2|G|1507, 7SYT|1|2|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SYT_009 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.5209

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

7SYT|1|2|C|1273
7SYT|1|2|G|1274
7SYT|1|2|G|1275
7SYT|1|2|A|1276
7SYT|1|2|C|1277
*
7SYT|1|2|G|1320
7SYT|1|2|G|1321
7SYT|1|2|G|1322
7SYT|1|2|U|1323
7SYT|1|2|G|1324
*
7SYT|1|2|U|1504
7SYT|1|2|U|1505
7SYT|1|2|A|1506
7SYT|1|2|G|1507
7SYT|1|2|A|1508
7SYT|1|2|U|1509
7SYT|1|2|G|1510

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

S10_plectin domain-containing protein

Chain e

eS29

Chain g

40S ribosomal protein S27a