J3_7SYU_004

3D structure

PDB id

7SYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

AUUC*GGACCAGAG*CAUUU

Length

18 nucleotides

Bulged bases

7SYU|1|2|G|986, 7SYU|1|2|G|991

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SYU_004 not in the Motif Atlas

Homologous match to J3_8P9A_074

Geometric discrepancy: 0.1278

The information below is about J3_8P9A_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23895.1

Basepair signature

cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7SYU|1|2|A|938
7SYU|1|2|U|939
7SYU|1|2|U|940
7SYU|1|2|C|941
*
7SYU|1|2|G|985
7SYU|1|2|G|986
7SYU|1|2|A|987
7SYU|1|2|C|988
7SYU|1|2|C|989
7SYU|1|2|A|990
7SYU|1|2|G|991
7SYU|1|2|A|992
7SYU|1|2|G|993
*
7SYU|1|2|C|1000
7SYU|1|2|A|1001
7SYU|1|2|U|1002
7SYU|1|2|U|1003
7SYU|1|2|U|1004

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

eS1

Chain P

uS11

Chain b

eS26 (S26)