J3_7SYU_009

3D structure

PDB id

7SYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGGAC*GGGUG*UUAGAUG

Length

17 nucleotides

Bulged bases

7SYU|1|2|G|1274, 7SYU|1|2|G|1507, 7SYU|1|2|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SYU_009 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.526

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

7SYU|1|2|C|1273
7SYU|1|2|G|1274
7SYU|1|2|G|1275
7SYU|1|2|A|1276
7SYU|1|2|C|1277
*
7SYU|1|2|G|1320
7SYU|1|2|G|1321
7SYU|1|2|G|1322
7SYU|1|2|U|1323
7SYU|1|2|G|1324
*
7SYU|1|2|U|1504
7SYU|1|2|U|1505
7SYU|1|2|A|1506
7SYU|1|2|G|1507
7SYU|1|2|A|1508
7SYU|1|2|U|1509
7SYU|1|2|G|1510

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

eS10

Chain e

eS29

Chain g

40S ribosomal protein S27a