J3_7SYV_001

3D structure

PDB id

7SYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SYV_001 not in the Motif Atlas

Homologous match to J3_8P9A_068

Geometric discrepancy: 0.1447

The information below is about J3_8P9A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.1

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7SYV|1|2|A|40
7SYV|1|2|G|41
*
7SYV|1|2|C|481
7SYV|1|2|G|482
7SYV|1|2|C|483
7SYV|1|2|A|484
7SYV|1|2|A|485
7SYV|1|2|A|486
7SYV|1|2|U|487
*
7SYV|1|2|A|512
7SYV|1|2|G|513
7SYV|1|2|U|514

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain Y

uS12

Chain x

Eukaryotic translation initiation factor 5B