J3_7SYV_017
3D structure
- PDB id
- 7SYV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGG*UAAGA*UA
- Length
- 10 nucleotides
- Bulged bases
- 7SYV|1|2|G|921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7SYV_017 not in the Motif Atlas
- Geometric match to J3_8P9A_071
- Geometric discrepancy: 0.1886
- The information below is about J3_8P9A_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01633.1
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
7SYV|1|2|U|682
7SYV|1|2|G|683
7SYV|1|2|G|684
*
7SYV|1|2|U|918
7SYV|1|2|A|919
7SYV|1|2|A|920
7SYV|1|2|G|921
7SYV|1|2|A|922
*
7SYV|1|2|U|1022
7SYV|1|2|A|1023
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain I
- 40S ribosomal protein S7
- Chain M
- uS17
- Chain O
- uS15
- Chain X
- uS8
- Chain Y
- uS12
- Chain c
- eS27
Coloring options: