J3_7SYX_004

3D structure

PDB id

7SYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUUC*GGACCAGAG*CAUUU

Length

18 nucleotides

Bulged bases

7SYX|1|2|G|991

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SYX_004 not in the Motif Atlas

Homologous match to J3_8P9A_074

Geometric discrepancy: 0.124

The information below is about J3_8P9A_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23895.1

Basepair signature

cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7SYX|1|2|A|938
7SYX|1|2|U|939
7SYX|1|2|U|940
7SYX|1|2|C|941
*
7SYX|1|2|G|985
7SYX|1|2|G|986
7SYX|1|2|A|987
7SYX|1|2|C|988
7SYX|1|2|C|989
7SYX|1|2|A|990
7SYX|1|2|G|991
7SYX|1|2|A|992
7SYX|1|2|G|993
*
7SYX|1|2|C|1000
7SYX|1|2|A|1001
7SYX|1|2|U|1002
7SYX|1|2|U|1003
7SYX|1|2|U|1004

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

eS1

Chain O

uS15

Chain P

uS11

Chain b

eS26