J3_7TM3_006

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

UU*AGAAG*CGUGGA

Length

13 nucleotides

Bulged bases

7TM3|1|K|A|1805, 7TM3|1|K|U|1834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TM3_006 not in the Motif Atlas

Homologous match to J3_8P9A_051

Geometric discrepancy: 0.4248

The information below is about J3_8P9A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84137.1

Basepair signature

cWW-cWW-cHW-F-cSS-F-cWW

Number of instances in this motif group

4

Unit IDs

7TM3|1|K|U|1726
7TM3|1|K|U|1727
*
7TM3|1|K|A|1802
7TM3|1|K|G|1803
7TM3|1|K|A|1804
7TM3|1|K|A|1805
7TM3|1|K|G|1806
*
7TM3|1|K|C|1832
7TM3|1|K|G|1833
7TM3|1|K|U|1834
7TM3|1|K|G|1835
7TM3|1|K|G|1836
7TM3|1|K|A|1837

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain F

60S ribosomal protein L7

Chain T

eL21

Chain b

eL29