J3_7TM3_008

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

GAAG*CCAUAUC*GUC

Length

14 nucleotides

Bulged bases

7TM3|1|K|U|2788, 7TM3|1|K|A|2789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TM3_008 not in the Motif Atlas

Homologous match to J3_8C3A_007

Geometric discrepancy: 0.2618

The information below is about J3_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_74051.1

Basepair signature

cWW-tSH-tWW-tHW-F-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7TM3|1|K|G|2402
7TM3|1|K|A|2403
7TM3|1|K|A|2404
7TM3|1|K|G|2405
*
7TM3|1|K|C|2785
7TM3|1|K|C|2786
7TM3|1|K|A|2787
7TM3|1|K|U|2788
7TM3|1|K|A|2789
7TM3|1|K|U|2790
7TM3|1|K|C|2791
*
7TM3|1|K|G|2800
7TM3|1|K|U|2801
7TM3|1|K|C|2802

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain g

60S ribosomal protein L34

Chain j

Ribosomal protein L37

Chain l

eL39