J3_7TM3_015

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

7TM3|1|K|A|4464, 7TM3|1|K|U|4465

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TM3_015 not in the Motif Atlas

Homologous match to J3_8C3A_011

Geometric discrepancy: 0.1068

The information below is about J3_8C3A_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

7TM3|1|K|U|4463
7TM3|1|K|A|4464
7TM3|1|K|U|4465
7TM3|1|K|C|4466
*
7TM3|1|K|G|4491
7TM3|1|K|U|4492
7TM3|1|K|U|4493
*
7TM3|1|K|A|4507
7TM3|1|K|C|4508
7TM3|1|K|U|4509
7TM3|1|K|A|4510
7TM3|1|K|A|4511
7TM3|1|K|U|4512
7TM3|1|K|A|4513

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain O

uL13

Chain V

Ribosomal protein L23

Chain w

uL3