J3_7TOO_004

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

7TOO|1|A25S|A|817, 7TOO|1|A25S|G|924

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TOO_004 not in the Motif Atlas

Homologous match to J3_8C3A_003

Geometric discrepancy: 0.0834

The information below is about J3_8C3A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7TOO|1|A25S|U|814
7TOO|1|A25S|G|815
7TOO|1|A25S|A|816
7TOO|1|A25S|A|817
7TOO|1|A25S|C|818
7TOO|1|A25S|U|819
7TOO|1|A25S|A|820
*
7TOO|1|A25S|U|905
7TOO|1|A25S|A|906
7TOO|1|A25S|G|907
*
7TOO|1|A25S|C|923
7TOO|1|A25S|G|924
7TOO|1|A25S|A|925
7TOO|1|A25S|A|926

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL02

60S ribosomal protein L2-A

Chain AL15

60S ribosomal protein L15-A

Chain AL37

60S ribosomal protein L37-A